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NCBI

This resource organizes information on genomes including sequences, maps, chromosomes, assemblies, and annotations.

UCSC

This site contains the reference sequence and working draft assemblies for a large collection of genomes. It also provides portals to the ENCODE and Neandertal projects.

ENSEMBL

The Ensembl project produces genome databases for vertebrates and other eukaryotic species.

Annmap

Annmap is a genome browser that includes mappings between genomic features and Affymetrix microarrays.

Broad Institute

Argo Genome Browser is the Broad Institute's production tool for visualizing and manually annotating whole genomes.

Artemis

Artemis is a free genome browser and annotation tool that allows visualisation of sequence features, next generation data and the results of analyses within the context of the sequence, and also its six-frame translation.

Avadis NGS

Genome Browser is a representation of a complete genome on which the sequenced reads can be visualized. Annotation data, such as cytobands, genes, and transcripts, can be superimposed, as well as results from various analyses, such as peak regions, SNPs, and gene fusions.

Celera Genome Browser

The Celera Genome Browser, developed at Celera Genomics as part of Celera's sequencing and annotation of the human genome.

Babraham Bioinformatics

A tool to visualise and analyse ChIP-on-chip array data

Biodalliance

Biodalliance is a fast, interactive, genome visualization tool that's easy to embed in web pages and applications. It supports integration of data from a wide variety of sources, and can load data directly from popular genomics file formats. This means you can build a fully-featured genome browser.

Genome Savant

Built with the latest generation of sequencing data in mind. Use Savant to do next-gen analysis.

Genome View

GenomeView is a next-generation stand-alone genome browser. It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more.

Genome Maps

Genome Maps is focused on providing the best user experience possible with modern drag navigation and many features included.

HuRef

The HuRef Genome Browser is a Web resource for the navigation of an individual human genome, termed HuRef, published in PLoS Biology.

Hyper Browser

The Genomic HyperBrowser is a generic web-based system, providing statistical methodology and computing power to handle a variety of biological inquires on genomic datasets.

GenPlay

GenPlay is an extremely fast, easy to use and stable tool for rapid analysis and data processing. Can display data obtained either with micro-array based or sequencing based platforms. It displays tracks adapted to summarize gene structure, gene expression; repeat families, CPG islands, etc. and can also display custom tracks to show the results of RNA-seq, Chip-Seq or TimEX-seq analysis, for example.

Golden Helix

Golden Helix GenomeBrowse visualization tool is an evolutionary leap in genome browser technology that combines an attractive and informative visual experience with a robust, performance-driven backend.

Integrated Genome Browser

Integrated Genome Browser (IGB, pronounced Ig-Bee) is an easy-to-use, highly customizable genome browser you can use to visualize and explore genomic data and annotations, including RNA-Seq, ChIP-Seq, tiling array data, and more.

The Integrative Genomics Viewer

The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.

JBrowse

JBrowse is a fast, embeddable genome browser built completely with JavaScript and HTML5, with optional run-once data formatting tools written in Perl.

myKaryoView

myKaryoView is a web tool for visualization specifically tailored to Direct to customer of genomic data that works in most contemporary browsers and uses publicly available data distributed throughout the Internet. This means that there is no need to hold the data locally and that it is capable of rendering any data as long as it conforms to a standard protocol named DAS.

MochiView

MochiView is Java software that integrates browsing of genomic sequences, features, and data with DNA motif visualization and analysis.

NextBio

NextBio provides a state of the art scientific platform to aggregate and interpret large quantities of genomic data for research and clinical applications.

Pathway Tools

Pathway Tools is a comprehensive symbolic systems biology software system that supports several use cases in bioinformatics and systems biology.

Genome Savant

Built with the latest generation of sequencing data in mind. Use Savant to do next-gen analysis, today.

VISTA Enhancer Browser

TheVISTA Enhancer Browseris a central resource for experimentally validated human and mouse noncoding fragments with gene enhancer activity as assessed in transgenic mice

WashU EpiGenome Browser

Web-based visual exploration of genomics and epigenomics data sets.